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Account name (lowercase) | Description | |||||
| SOLiD™ System SRF Conversion Tool | srf | Applied Biosystems SOLiD™ System Sequence Read Format Conversion Tool | |||||
| SOLiD™ System Small RNA Analysis Tool | rna2map | Applied Biosystems SOLiD™ System Human Small RNA Analysis Pipeline Tool | |||||
| SOLiD™ System Human Small RNA Data | srna | Applied Biosystems SOLiD™ System Human Small RNA Data Set | |||||
| SOLiD™ System GFF Conversion Tool | matogff | Applied Biosystems SOLiD™ System General Feature Format Conversion Tool | |||||
| SOLiD™ System E. Coli DH10B Fragment | dh10bfrag | Applied Biosystems SOLiD™ System E.Coli DH10B Fragment Data | |||||
| SOLiD™ System E. Coli DH10B 2X50 Data | ecoli2x50 | This data set was sequenced using the SOLiD™ System. It consists of a sequence run from a 2X50 mate-pair library. (and represents 293 panels of data or 1/8 of a slide totaling 58 million reads. It is approximately a 200X coverage of the E. Coli DH10B genome.) | |||||
| SOLiD™ System de Novo Accessory Tools | denovo | SOLiD™ System de Novo Accessory Tools | |||||
| SOLiD™ System Color Space Mapping Tool | mapreads | Applied Biosystems SOLiD™ System Color Space Alignment Tool | |||||
| SOLiD™ System Analysis Pipeline Tool | corona | Applied Biosystems SOLiD™ System Whole Genome Analysis Pipeline Tool | |||||
| SOLiD™ System Alignment Browser | sab | Applied Biosystems SOLiD™ System SOLiD™ Alignment Browser | |||||
| SOCS | socs | Color space alignment tool | |||||
| SHRiMP — SHort Read Mapping Package | shrimp | SHRiMP is a tool for mapping short read data in color-space or letter-space | |||||
| Instructions of Account Use | account | Instructions of Account Use | |||||
| Galaxy | galaxy | Galaxy is a web-based framework that integrates data sources and tools, making analysis simple and reproducible. | |||||
| BFAST Blatlike Fast Accurate Search Tool | bfast | BFAST facilitates the fast and accurate mapping of short reads to reference sequences. | |||||
| AB WT Analysis Pipeline | transcriptome | Applied Biosystems AB Whole Transcriptome Analysis Pipeline will allow you to map transcript reads to a reference genome, count both exon and gene tags, and export data in a format that can be viewed in the UCSC browser. | |||||
| AB Small Indel Tool | indel | Applied Biosystems AB Small Indel Tool to identify small INDELs in data generated by the SOLID system | |||||
| AB Inversion Tool | inversion | Applied Biosystems Inversion Tool to identify inversions in data generated by the SOLID system | |||||
SOLiD™ System Color Space Mapping Tool (mapreads)