AB WT Analysis Pipeline

Description

• The AB WT Analysis Pipeline is an off-instrument SOLiD data analysis software package for the analysis of experiments run with the SOLiD™ System.  Currently it supports functionality for mapping SOLiD reads from a transcript sample to a reference genome and assigning tag counts to features of the reference genome.  The package can be run on PBS and LSF job management systems.  The output from this package can be viewed directly in the UCSC genome browser.

Licensing

• This software is being licensed to you under the OSI compliant GNU Public License (GPL V3). Please read the license in its entirety and ensure that you understand the licensing conditions for use. Your use of this software indicates your acceptance of this licensing agreement. Click on this link to read the licensing agreement.

Support

• This tool is being released as "unsupported software" by Applied Biosystems.

Packages

Pre-Bioscope™ Tool

• The current version of the tool can be downloaded here.
• Documentation and Release notes for this software can be found here.
• A sample dataset can be downloaded here.

Source Distribution (please note that this is a source ONLY distribution of a Bioscope algorithm and available through SVN checkout).

• Please contact website support to recieve access information
• The current version of the source can be downloaded here.
• Documentation and Release notes for this software can be found here.
• A sample dataset can be downloaded here.