SplitSeek
DescriptionSplitSeek is a program for de novo prediction of splice junctions in RNA-seq data. It is based on a split read alignment where the reads are split into two parts that are mapped separately. The alignments are then processed by the SplitSeek software through a number of analysis steps. The result is a list of predicted splice junctions which can be viewed in the UCSC genome browser. This method can also be applied to search for genomic rearrangements such as small insertions and deletions. PublicationFor a more detailed description of SplitSeek, please see: Ameur A, Wetterbom A, Feuk L, Gyllensten U. Global and unbiased detection of splice junctions from RNA-seq data. Genome Biol. 2010 Mar 17;11(3):R34. Licensing
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