SHRiMP - The SHort Read Mapping Package
Please Note: This site often falls behind our primary site. See http://compbio.cs.toronto.edu/shrimp/ for the latest information!
About
SHRiMP is a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem's colourspace genomic representation.
SHRiMP was originally designed and written by Michael Brudno and Stephen M. Rumble, with considerable input and testing by the SidowLab. Since then, Adrian Dalca, Marc Fiume and Vladimir Yanovsky have made considerable contributions to probability calculations and 2-pass SMS mapping algorithms. The authors may be contacted via e-mail at: shrimp at cs.toronto.edu.
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| Description |
SHRiMP is a tool for mapping short read
data in color-space or letter-space
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| Developer Info |
Michael Brudno
Stephen Rumble
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| Trove Categorization |
- Development Status: 5 - Production/Stable
- Intended Audience: Developers,
End Users/Desktop
- License: MIT/X Consortium License
- Operating System: OS Independent
- Programming Language: C
- Spoken Language: English
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