SOLiD™ System Alignment Browser v2.0
Description
The SOLiD™ System Alignment Browser (SAB) v2.0 is a Genome Annotation Viewer and Editor, based on the Apollo Genome Annotation Curation Tool. It extends Apollo while maintaining all of its functionality. SAB runs on Windows, Linux and Mac OS.
What’s New in SOLiD Alignment Browser 2.0?
- Supports SOLiD GFFv0.2 file format; SOLiD GFFv0.2 Specifications can be found here
- Reads GFFv0.2 files of virtually unlimited size using novel on-the-fly indexing mechanism. Reference standard FASTA files can be up to 2Gb
- Enhanced Annotations visualization, optional anti-aliasing when zoomed out
- Correct Color Space visualization. Corrected relative positioning of Color Space Data against reference Base Space Data
Please note SAB no longer supports SOLiD GFFv0.1
The source code is openly available and can downloaded.
Licensing
- This software is being licensed to you under the Artistic License. Please read the license in its entirety and ensure that you understand the licensing conditions for use. Your use of this software indicates your acceptance of this licensing agreement. Click on this link to read the licensing agreement.
Support
- This tool is being released as "unsupported software" by Applied Bioysystems
Documentation
Software Download
Sample Data Download
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| Description |
Applied Biosystems SOLiD™ System
SOLiD™ Alignment Browser
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| Developer Info |
SOLiD™ System Developer
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| Trove Categorization |
- Development Status: 5 - Production/Stable
- Intended Audience: Developers,
End Users/Desktop
- License: Artistic License Version 2
- Operating System: Linux,
MacOS,
Windows
- Programming Language: Java
- Spoken Language: English
- Topic: Bio-Informatics
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