SOLiD™ System GFF Conversion Tool (matogff)

Description

• The SOLiD™ System GFF Conversion Tool is used to convert SOLiD™ System mapping files into GFF-formatted files.  The GFF file is a text-based repository and contains data and analysis results; colorspace calls, quality values (QV) and variant annotations. The inputs to the GFF Conversion Tool are the matching files (.ma), the reference sequence, and the QV files (.qv.qual) .  This tool will produce a GFF file with annotation in both base and color space for further downstream analysis.

Licensing

• This software is being licensed to you under the Applied Biosystems SOLiD™ Tools Software License (Unsupported).  Please read the license in its entirety and ensure that you understand the licensing conditions for use.  Your use of this software indicates your acceptance of this licensing agreement. Click on this link to read the licensing agreement.

Support

• This tool is being released as "unsupported software" by Applied Biosystems.

Documentation

• Documentation for SOLiD™ System GFF Conversion Tool  (matogff)
• GFF format definition document

Packages

 Pre-Bioscope™ Tool

• The current version of the tool can be downloaded here.

Source Distribution (please note that this is a source ONLY distribution of a Bioscope algorithm and available through SVN checkout)

• The current version of the source can be downloaded here.

Sample Data Download

• Sample data for this package can be downloaded here