SOLiD™ System GFF Conversion Tool (ma2gff)
Description
The SOLiD™ System GFF Conversion Tool is used to convert SOLiD™ System mapping files into a GFF formated files. The GFF file is a text based repository and contains data and analysis results; colorspace calls, quality values (QV) and variant annotations. The inputs to the GFF file Conversion Tool are the matching files (.ma), the reference sequence, and the QV files (.qv.qual) . This tool will produce a GFF file with annotation in both base and color space for further downstream analysis.
Licensing
- This software is being licensed to you under the Applied Biosystems SOLiD™ Tools Software License (Unsupported). Please read the license in its entirety and ensure that you understand the licensing conditions for use. Your use of this software indicates your acceptance of this licensing agreement. Click on this link to read the licensing agreement.
Support
- This tool is being released as "unsupported software" by Applied Bioysystems
Documentation
Software Download
Sample Data Download
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| Description |
Applied Biosystems SOLiD™ System
General Feature Format Conversion Tool
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| Developer Info |
SOLiD™ System Developer
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| Trove Categorization |
- Development Status: 5 - Production/Stable
- Intended Audience: Developers,
End Users/Desktop
- License: Applied Biosystems SOLiD™ Tools Software License (Unsupported)
- Operating System: OS Independent
- Programming Language: Java
- Spoken Language: English
- Topic: Bio-Informatics
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