AB diBayes SNP Tool

Description

• The diBayes package is the tool to identify SNPs from mapped and processed SOLiD™ System color space reads. It takes the color space reads and their quality values (in the form of GFF files from a single slide or from multiple slides), the reference sequence and error information on each SOLiD™ slide as its input, and calls SNPs. It creates three final output files: a list of SNPs, a consensus fasta file with the same number of bases as the reference sequence (optional), and a list of all covered positions (optional).The diBayes tool package has three key components, diBayesInput, diBayes, and diBayesWrapper.Using diBayesWrapper and a centralized configuration file, diBayesInput and diBayes can be run automatically with a single command, These two key components can also be run separately, when parallel processing multiple GFF files from multiple and accessing algorithm fine-tuning parameters are needed for advanced users.

Licensing

• This software is being licensed to you under the OSI compliant GNU Public License (GPL). Please read the license in its entirety and ensure that you understand the licensing conditions for use. Your use of this software indicates your acceptance of this licensing agreement. Click on this link to read the licensing agreement.

Support

• This tool is being released as "unsupported software" by Applied Bioysystems

Packages

 Pre-Bioscope™ Tool

• The current version of the tool can be downloaded here
• Documentation and Release notes for this software can be found here.
• A sample dataset can be downloaded here.

Source Distribution (please note that this is a source ONLY distribution of a Bioscope algorithm and available through SVN checkout)

• Please contact website support to recieve access information
• The current version of the source can be downloaded here.
• Documentation and Release notes for this software can be found here.
• A sample dataset can be downloaded here