SOLiD™ System E. Coli DH10B Fragment

Summary Reporting Search Forums

Home » Projects » SOLiD™ System E. Coli DH10B Fragment » Home

SOLiD™ System E.Coli DH10B Fragment Data Set

Description

This data set was sequenced using the SOLiD™ System. It consists of a sequencing run from a fragment library of E.Coli DH10B.

Licensing

This data is being licensed to you under the Applied Biosystems SOLiD™ System Data Use Agreement (Unsupported). Please read the license in its entirety and ensure that you understand the licensing conditions for use. Your use of this data indicates your acceptance of this licensing agreement. Click on this link to read the licensing agreement.

Support

This data is being released as "unsupported data" by Applied Biosystems

Download

The diagram below describes the pipeline workflow and the various data fles that are downloadable for this data set. Click on a link in the table below the diagram to download a file.

Name on Figure	File Name	Description
.qv	R1a007_20080307_2_EG017_F3_QV.qual.zip	These are FASTA-like files that list the quality values in sequence order (not cycle order) for the color space calls (i.e. the QV maps to the csfasta file result and is calculated at the same time as the color call is made).
.csfasta	R1a007_20080307_2_EG017_F3.csfasta.zip	Color space fasta file which contains the color calls generated for each tag, containing the color space calls with the last base of the template strand adaptor prepended.
Coverage Files	fwd_rev_coverage.txt.zip	Contains information regarding the coverage of forward and reverse strand of each position. In this file there will be two columns. The first column contains the number of times that particular forward strand base (in color space) is covered. The second column contains that the exact same information but for the reverse strand.
Stats.txt	R1a007_20080307_2_V1_F3.35.3.stats.txt.zip	The stats file contains a summary of the data for a run.
.ma	R1a007_20080307_2_EG017_F3.csfasta.ma.35.3.zip	Color space fasta file containing matches to the reference sequence.
GFF	F3_alignment.v2.base.gff.zip	A comprehensive description of this file output is located here.
Consensus fasta	bp_consensus_confirmed_sequence_with_Ns.fasta.zip	Contains information derived from the variation pipeline and is in base space. It reports the SNPs detected in the run.
Reference Genome (FASTA)	DH10B_WithDup_FinalEdit_validated.fasta.zip	Reference Genome

Join Project
~~Request to join project~~
Description
Applied Biosystems SOLiD™ System E.Coli DH10B Fragment Data
Developer Info
SOLiD™ System Developer
Trove Categorization
Development Status: 5 - Production/Stable Intended Audience: Developers, End Users/Desktop License: Applied Biosystems SOLiD™ System Data Use Agreement (Unsupported) Programming Language: Not Applicable Topic: Bio-Informatics