SOLiD™ System Analysis Pipeline Tool (Corona Lite)

Description

•  The SOLiD™ System Analysis Pipeline Tool is an off-instrument SOLiD data analysis software package. It has been optimzed for use with large genomes such as Human, Mouse, A. Thaliana and C. elegans. Currently it  supports functionality  for mapping SOLiD™ reads to reference genomes, pairing for mate-pair runs, SNP calling  and generating consensus sequences.The package has been tested on PBS and LSF job management systems, it has also been successfully used under SGE (Sun Grid Enging) and it should be configuable on any compute farm system.

Licensing

• This software is being licensed to you under the OSI compliant GNU Public License (GPL). Please read the license in its entirety and ensure that you understand the licensing conditions for use. Your use of this software indicates your acceptance of this licensing agreement. Click on this link to read the licensing agreement.

Support

• This tool is being released as "unsupported software" by Applied Bioysystems

Documentation

• Installation Instructions and Release Notes
• README documentation for matching procedure
• README documentation for pairing procedure
• README documentation for SNP calling procedure

Software Download

• This software is distributed as source code.  The current version of the SOLiD™ System Analysis Pipeline Tool can be downloaded here.

Sample Data Download

• E. Coli sample data for this software tool can be downloaded here.
• Human sample data for this software tool can be downloaded here.